Tutorial_install

library(kmerize)
#> Registered S3 method overwritten by 'GGally':
#>   method from   
#>   +.gg   ggplot2
#> Registered S3 method overwritten by 'arrow':
#>   method          from        
#>   as.vector.Array DelayedArray

This package

install.packages("devtools")
devtools::install_github("c5sire/kmerize")

Supporting tools

This package uses 3rd party tools for basic optimized k-mer creation. Currently, this is the KMC3 set of tools (REF). The toolkit needs to be installed via the provided function. If no reference to a local file is provided, the appropriate version for your local operating sytem (OS) will automatically be chosen as shown below.

kmerize::kmr_install_kmc()