kmr_plot_response.Rd
Plots genomics response object.
kmr_plot_response(res, ref_k = NULL, limit = 0, max_y = -1)
res | result from genomic response scan |
---|---|
ref_k | a reference k value to include |
limit | a numeric value between 0 and 1. If 0 no line will be displayed. Default is 0. A recommended value is 0.95. |
max_y | a maximum y value. Default 0 indicates automatic selection. |
plot
Other kmer_help:
kmr_compare()
,
kmr_length_fasta()
,
kmr_map_kmers()
,
kmr_plot_map()
,
kmr_position_coverage()
,
kmr_response()
,
kmr_scan_k_min()
if (interactive()) { fa <- system.file("testdata/phix174-pe_w_err_5k_30q.fastq.gz", package = "kmerize" ) fp <- system.file("testdata/phix174.fasta", package = "kmerize") dna <- Biostrings::readDNAStringSet(fp) k <- as.integer(seq(3, 17, 2)) res <- kmr_response(fa, k, fmt = "q") kmr_plot_response(res, ref_k = 9, max_y = max(res$distinct)) }