kmr_write_parquet — kmr_write_parquet • kmerize

Write kmer database as parquet format.

kmr_write_parquet(db, to = db)

Arguments

db	Name of kmer database
to	Name of target file (default same as db name)

Value

logical

See also

Other kmer_core: kmr_count(), kmr_install_kmc(), kmr_read_parquet(), kmr_read_rds(), kmr_read_tab(), kmr_write_rds(), kmr_write_tab()

Examples

if (interactive()) {

  fa <- system.file("testdata/phix174_m-pe_w_err_5k_30q.fastq.gz",
  package = "kmerize")

  out_file <- file.path(tempdir(), "phx174")
  k <- 7
  kmr_count(fa, out_file, k = k, f = "q")

  kmr_write_parquet(out_file)

}