kmr_write_tab — kmr_write_tab • kmerize

Write kmer database as tab format.

kmr_write_tab(db, to = db)

Arguments

db	Name of kmer database
to	Name of target file (default same as db name)

Value

logical

See also

Other kmer_core: kmr_count(), kmr_install_kmc(), kmr_read_parquet(), kmr_read_rds(), kmr_read_tab(), kmr_write_parquet(), kmr_write_rds()

Examples

if (interactive()) {

  fa <- system.file("testdata/phix174_m-pe_w_err_5k_30q.fastq.gz",
  package = "kmerize")

  out_file <- file.path(tempdir(), "phx")
  k <- 7
  kmr_count(fa, out_file, k = k, f = "q")

  kmr_write_rds(out_file)

  dat <- kmr_read_rds(out_file)
  head(dat)

}